Two new Pseudohalonectria species on beech cupules (Fagus sylvatica) and a new genus to accommodate P. suthepensis

Authors

  • REKHANI H. PERERA Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Xiaohe District, Guiyang City, Guizhou Province 550006, People’s Republic of China School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
  • SAJEEWA S. N. MAHARACHCHIKUMBURA Department of Crop Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University, PO Box 8, Al Khoud 123, Oman
  • H. ARIYAWANSA Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Xiaohe District, Guiyang City, Guizhou Province 550006, People’s Republic of China
  • ALI H. BAHKALI Department of Botany and Microbiology, King Saud University, Riyadh, Saudi Arabia
  • E.B. GARETH JONES Department of Botany and Microbiology, King Saud University, Riyadh, Saudi Arabia
  • ABDULLAH M. AL-SADI Department of Crop Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University, PO Box 8, Al Khoud 123, Oman
  • KEVIN D. HYDE School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China World Agroforestry Centre, East and Central Asia, 132 Lanhei Road, Kunming 650201, China
  • ZUO-YI LIU Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Xiaohe District, Guiyang City, Guizhou Province 550006, People’s Republic of China

DOI:

https://doi.org/10.11646/phytotaxa.278.2.2

Keywords:

Magnaporthales, morphology, phylogeny, Sordariomycetes, systematics

Abstract

We are studying the fungi on seeds and fruits and identified two Pseudohalonectria species from cupules of beech nut (Fagus sylvatica), collected from slightly anoxic, stagnant water in the moat in Bishops Palace, Hampshire, UK. Phylogenetic analysis of combined LSU, SSU and TEF1 sequence data provides evidence that they are new species in the genus. Pseudohalonectria hampshirensis and P. fagicola spp. nov. are introduced in this paper with descriptions, photomicrographs and molecular evidence. They are compared with closely related species in the genus and a key to the genus is provided. As a result of the phylogenetic analyses P. suthepensis is excluded from Pseudohalonectria and a new genus, Tropohalonectria is introduced to accommodate the species.

References

Cai, L., Tsui, C.K.M., Zhang, K. & Hyde, K.D. (2002) Aquatic fungi from Lake Fuxian, Yunnan, China. Fungal Diversity 9: 57–70.

http://dx.doi.org/10.1007/s11284-012-0947-3

Carbone, I. & Kohn, L.M. (1999) A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91: 553–556.

http://dx.doi.org/10.2307/3761358

Chen, W., Shearer, C.A. & Crane, J.L. (1999) Phylogeny of Ophioceras spp. based on morphological and molecular data. Mycologia 91: 84–94.

http://dx.doi.org/10.2307/3761195

Chomnunti, P., Hongsanan, S., Hudson, B.A., Tian, Q., Persoh, D., Dhami, M.K., Alias, A.S., Xu, J., Liu, X., Stadler, M. & Hyde, K.D. (2014) The sooty moulds. Fungal Diversity 66: 136.

http://dx.doi.org/10.1007/s13225-014-0278-5

Fukasawa, Y., Tateno, O., Hagiwara, Y., Hirose, D. & Osono, T. (2012) Fungal succession and decomposition of beech cupule litter. Ecological Research 27: 735–743.

http://dx.doi.org/10.1007/s11284-012-0947-3

Ho, W.H., Hyde, K.D. & Hodgkiss, I.J. (2001) Fungal communities on submerged wood from streams in Brunei, Hong Kong and Malaysia. Mycological Research 105: 1492–1501.

http://dx.doi.org/10.1017/S095375620100507X

Ho, W.H., Yanna, Hyde, K.D. & Hodgkiss, I.J. (2002) Seasonality and sequential occurrence of fungi on wood submerged in Tai Po Kau Forest Stream, Hong Kong. Fungal Diversity 10: 21–43.

Huhndorf, S.M., Greif, M. & Miller, A.N. (2008) Two new genera in the Magnaporthaceae, a new addition to Ceratosphaeria and two new species of Lentomitella. Mycologia 100: 940–955.

http://dx.doi.org/10.3852/08-037

Huhndorf, S.M., Miller, A.N. & Fernández, F.A. (2004) Molecular systematics of the Sordariales: the order and the family Lasiosphaeriaceae redefined. Mycologia 96: 368–387.

http://dx.doi.org/10.2307/3762068

Hyde, K.D. & Fröhlich, J. (2003) Nigramammilla calami gen. et sp. nov. and Arecomyces calami, A. licualae and Pseudohalonectria palmae spp. nov. from palms. Cryptogamie Mycologie 24: 13–20.

Hyde, K.D. & Goh, T.K. (1999) Fungi on submerged wood from the River Coln, England. Mycological Research 103: 1561–1574.

http://dx.doi.org/10.1017/S0953756299008989

Hyde, K.D., Taylor, J.E. & Fröhlich, J. (1999) Two new species of Pseudohalonectria from palms. Mycologia 91: 520–524.

http://dx.doi.org/10.2307/3761353

Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754–755.

http://dx.doi.org/10.1093/bioinformatics/17.8.754

Jayasiri, S.C., Hyde, K.D., Ariyawansa, H.A., Bhat, D.J., Buyck, B., Cai, L., Dai, Y.C., Abd-Elsalam, K.A., Ertz, D., Hidayat, I., Jeewon, R., Jones, E.B.G., Bahkali, A.H., Karunarathna, S.C., Liu, J.K., Luangsa-ard, J.J., Lumbsch, H.T., Maharachchikumbura, S.S.N., McKenzie, E.H.C., Moncalvo, J.M., Ghobad-Nejhad, M., Nilsson, H., Pang, K.L., Pereira, O.L., Phillips, A.J.L., Raspé, O., Rollins, A.W., Romero, A.I., Etayo, J., Selçuk, F., Stephenson, S.L., Suetrong, S., Taylor, J.E., Tsui, C.K.M., Vizzini, A., Abdel-Wahab, M.A., Wen, T.C., Boonmee, S., Dai, D.Q., Daranagama, D.A., Dissanayake, A.J., Ekanayaka, A.H., Fryar, S.C., Hongsanan, S., Jayawardena, R.S., Li, W.J., Perera, R.H., Phookamsak, R., De Silva, N.I., Thambugala, K.M., Tian, Q., Wijayawardene, N.N., Zhao, R.L., Zhao, Q., Kang, J.C. & Promputtha, I. (2015) The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts. Fungal Diversity 74: 3–18.

http://dx.doi.org/10.1007/s13225-015-0351-8

Kane, D.F., Tarn, W.Y. & Jones, E.B.G. (2002) Fungi colonising and sporulating on submerged wood in the River Severn, UK. In: Hyde, K.D. & Jones, E.B.G. (Eds.) Fungal Succession. Fungal Diversity 10: 45–55.

Klaubauf, S., Tharreau, D., Fournier, E., Groenewald, J.Z., Crous, P.W., de Vries, R.P. & Lebrun, M.H. (2014) Resolving the polyphyletic nature of Pyricularia (Pyriculariaceae). Studies in Mycology 79: 85–120.

http://dx.doi.org/10.1016/j.simyco.2014.09.004

Kohlmeyer, J., Volkmann-Kohlmeyer, B. & Tsui, C.K.M. (2005) Fungi on Juncus roemerianus. 17. New ascomycetes and the hyphomycete genus Kolletes gen. nov. Botanica Marina 48: 306–317.

http://dx.doi.org/10.1515/BOT.2005.040

Maharachchikumbura, S.S.N., Hyde, K.D., Jones, E.B.G., McKenzie, E.H.C., Huang, S.K., Abdel- Wahab, M.A., Daranagama, D.A., Dayarathne, M., D’souza, M.J., Goonasekara, I.D., Hongsanan, S., Jayawardena, R.S., Kirk, P.M., Konta, S., Liu, J.K., Liu, Z.Y., Norphanphoun, C., Pang, K.L., Perera, R.H., Senanayake, I.C., Shang, Q., Shenoy, B.D., Xiao, Y., Bahkali, A.H., Kang, J., Somrothipol, S., Suetrong, S., Wen, T. & Xu, J. (2015) Towards a natural classification and backbone tree for Sordariomycetes. Fungal Diversity 72: 199–301.

http://dx.doi.org/10.1007/s13225-015-0331-z

Maharachchikumbura, S.S.N., Hyde, K.D., Jones, E.B.J., McKenzie, E.H.C., Bhat J., Hawksworth, D.L., Dayarathne, M., Huang, S.K., Norphanphoun, C., Senanayake, I.C., Perera, R.H., Shang, Q., Xiao, Y., D’souza, M.J., Hongsanan, S., Jayawardena, R.S., Daranagama, D.A., Konta, S., Goonasekara, I.D., Zhuang, W.Y., Jeewon, R., Phillips, A.J.L., Abdel-Wahab, M.A., Al-Sadi, A.M., Bahkali, A.H., Boonmee, S., Boonyuen, N., Cheewangkoon R, Dissanayake, A.J., Kang J., Liu, J.K., Liu, X., Liu Z.Y., Pang, K.L., Phookamsak, R., Promputtha I., Suetrong, S., Wen, T.C. & Wijayawardene, N.N. (2016) Families of Sordariomycetes. Fungal Diversity 79: 1–317.

http://dx.doi.org/10.1007/s13225-016-0369-6

Minoura, K. & Muroi, T. (1978) Some freshwater ascomycetes from Japan. Transactions of the Mycological Society of Japan 19: 129–134.

Nylander, J.A.A. (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Sweden.

Ono, Y., Kobayashi, T. (2001) Notes on new and noteworthy plant-inhabiting fungi from Japan (1). Mycoscience 42: 439–446.

http://dx.doi.org/10.1007/BF02464340

Promputtha, I., Lumyong, S., Lumyong, P., McKenzie, E.H.C. & Hyde, K.D. (2004) A new species of Pseudohalonectria from Thailand. Cryptogamie Mycologie 25: 43–47.

Réblová, M. (2013) Two taxonomic novelties in the Sordariomycetidae: Ceratolenta caudata gen. et sp. nov. and Platytrachelon abietis gen. et comb. nov. for Ceratosphaeria abietis. Mycologia 105: 462–475.

http://dx.doi.org/10.3852/12-199

Rehner, S.A. & Buckley, E. (2005) A Beauveria phylogeny inferred from nuclear ITS and EF1-alpha sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97: 84–98.

http://dx.doi.org/10.3852/mycologia.97.1.84

Shenoy, B.D., Vijaykrishna, D., Cai, L., Jeewon, R., Bhat, D.J. & Hyde, K.D. (2005) Pseudohalonectria miscanthicola sp. nov. and three interesting fungi from tropics. Cryptogamie Mycologie 26: 123–132.

Shearer, C.A. (1989) Pseudohalonectria (Lasiosphaeriaceae), an antagonistic genus from wood in freshwater. Canadian Journal of Botany 67: 1944–1955.

http://dx.doi.org/10.1139/b89-247

Shearer, C.A., Crane, J.L. & Chen, W. (1999) Freshwater Ascomycetes: Ophioceras Species. Mycologia 91: 145–156.

http://dx.doi.org/10.2307/3761204

Shearer, A. & Zare-Maivan, H. (1988) In vitro hyphal interactions among wood- and leaf-inhabiting Ascomycetes and Fungi Imperfecti from freshwater habitats. Mycologia 80: 31–37.

http://dx.doi.org/10.2307/3807490

Silvestro, D. & Michalak, I. (2011) raxmlGUI: a graphical front-end for RAxML. Organisms Diversity and Evolution 12: 335–337.

http://dx.doi.org/10.1007/s13127-011-0056-0

Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28: 2731–2739.

http://dx.doi.org/10.1093/molbev/msr121

Thongkantha, S., Jeewon, R., Vijaykrishna, D., Lumyong, S., McKenzie, E.H.C. & Hyde, K.D. (2009) Molecular phylogeny of Magnaporthaceae (Sordariomycetes) with a new species, Ophioceras chiangdaoense from Dracaena loureiroi in Thailand. Fungal Diversity 34: 157– 173.

Tsui, C.K.M. & Hyde, K.D. (2004) Biodiversity of fungi on submerged wood in a stream and estuary in the Tai Ho Bay, Hong Kong. Fungal Diversity 15: 205–220.

http://dx.doi.org/10.3354/ame021289

Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. The Journal of Bacteriology 172: 4238–4246.

White, T.J., Bruns, T., Lee, S. & Taylor, J.W. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR Protocols: a guide to methods and applications. Academic Press, New York, pp. 315–322.

http://dx.doi.org/10.1016/b978-0-12-372180-8.50042-1

Zhang, N., Zhao, S. & Shen, Q. (2011) A six-gene phylogeny reveals the evolution of mode of infection in the rice blast fungus and allied species. Mycologia 103: 1267–1276.

http://dx.doi.org/10.3852/11-022

Published

2016-10-07

Issue

Section

Article

Most read articles by the same author(s)

1 2 3 4 5 6 7 8 9 10 > >>